Anaquin

DOI: 10.18129/B9.bioc.Anaquin  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see Anaquin.

Statistical analysis of sequins

Bioconductor version: 3.17

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Author: Ted Wong

Maintainer: Ted Wong <t.wong at garvan.org.au>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Anaquin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Anaquin")

 

PDF	R Script	Anaquin - Vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version	2.24.0
In Bioconductor since	BioC 3.4 (R-3.3) (7 years)
License	BSD_3_clause + file LICENSE
Depends	R (>= 3.3), ggplot2 (>= 2.2.0)
Imports	ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2
LinkingTo
Suggests	RUnit, rmarkdown
SystemRequirements
Enhances
URL	www.sequin.xyz
BugReports	https://github.com/student-t/RAnaquin/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Anaquin_2.24.0.tar.gz
Windows Binary	Anaquin_2.24.0.zip
macOS Binary (x86_64)	Anaquin_2.24.0.tgz
macOS Binary (arm64)	Anaquin_2.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Anaquin
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Anaquin
Bioc Package Browser	https://code.bioconductor.org/browse/Anaquin/
Package Short Url	https://bioconductor.org/packages/Anaquin/
Package Downloads Report	Download Stats