AHMassBank

DOI: 10.18129/B9.bioc.AHMassBank  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see AHMassBank.

MassBank Annotation Resources for AnnotationHub

Bioconductor version: 3.17

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Author: Johannes Rainer [cre]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AHMassBank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHMassBank")

 

HTML	R Script	Provide EnsDb databases for AnnotationHub
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationHubSoftware, MassSpectrometry, Software
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	AnnotationHubData(>= 1.5.24)
LinkingTo
Suggests	BiocStyle, knitr, AnnotationHub(>= 2.7.13), rmarkdown, methods, CompoundDb(>= 1.1.4)
SystemRequirements
Enhances
URL	https://github.com/jorainer/AHMassBank
BugReports	https://github.com/jorainer/AHMassBank/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AHMassBank_1.0.0.tar.gz
Windows Binary	AHMassBank_1.0.0.zip
macOS Binary (x86_64)	AHMassBank_1.0.0.tgz
macOS Binary (arm64)	AHMassBank_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AHMassBank
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AHMassBank
Bioc Package Browser	https://code.bioconductor.org/browse/AHMassBank/
Package Short Url	https://bioconductor.org/packages/AHMassBank/
Package Downloads Report	Download Stats