DOI: 10.18129/B9.bioc.ADAM  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ADAM.

ADAM: Activity and Diversity Analysis Module

Bioconductor version: 3.17

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

Author: André Luiz Molan [aut], Giordano Bruno Sanches Seco [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at>

Citation (from within R, enter citation("ADAM")):


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biocViews GeneExpression, GeneSetEnrichment, KEGG, Microarray, Pathways, Software
Version 1.16.0
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL (>= 2)
Depends R (>= 3.5), stats, utils, methods
Imports Rcpp (>= 0.12.18), GO.db(>= 3.6.0), KEGGREST(>= 1.20.2), knitr, pbapply (>= 1.3-4), dplyr (>= 0.7.6), DT (>= 0.4), stringr (>= 1.3.1), SummarizedExperiment(>= 1.10.1)
LinkingTo Rcpp
Suggests testthat, rmarkdown, BiocStyle
SystemRequirements C++11
Depends On Me ADAMgui
Imports Me
Suggests Me
Links To Me
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