DOI: 10.18129/B9.bioc.ABarray  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ABarray.

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Bioconductor version: 3.17

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author: Yongming Andrew Sun

Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>

Citation (from within R, enter citation("ABarray")):


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PDF ABarray gene expression
PDF ABarray gene expression GUI interface
PDF   Reference Manual


biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.68.0
In Bioconductor since BioC 1.9 (R-2.4) (17 years)
License GPL
Imports Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils
Suggests limma, LPE
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package ABarray_1.68.0.tar.gz
Windows Binary ABarray_1.68.0.zip
macOS Binary (x86_64) ABarray_1.68.0.tgz
macOS Binary (arm64) ABarray_1.68.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ABarray
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABarray
Bioc Package Browser https://code.bioconductor.org/browse/ABarray/
Package Short Url https://bioconductor.org/packages/ABarray/
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