Multi-locus multi-purpose Crispr/Cas design
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Documentation for package ‘multicrispr’ version 1.10.1
Help Pages
| add_genome_matches | Add genome matches |
| add_inverse_strand | Add inverse strand |
| add_seq | Add sequence to GRanges |
| add_target_matches | Add target matches |
| bed_to_granges | Read bedfile into GRanges |
| char_to_granges | Convert character vector into GRanges |
| double_flank | Double flank |
| down_flank | Extend or Flank GRanges |
| dt2gr | GRanges <-> data.table |
| extend | Extend or Flank GRanges |
| extend_for_pe | Extend ranges for prime editing |
| extend_pe_to_gg | Extend prime editing target to find GG sites |
| extract_matchranges | Extract matching subranges |
| extract_subranges | Extract subranges |
| find_gg | Find GG |
| find_primespacers | Find prime editing spacers |
| find_spacers | Find crispr spacers in targetranges |
| genefile_to_granges | Convert geneids into GRanges |
| genes_to_granges | Convert geneids into GRanges |
| gr2dt | GRanges <-> data.table |
| has_been_indexed | Has been indexed? |
| index_genome | Index genome |
| index_targets | Index targets |
| plot_intervals | Interval plot GRanges |
| plot_karyogram | Karyo/Interval Plot GRanges(List) |
| read_ranges | Write GRanges to file |
| score_ontargets | Add on-target efficiency scores |
| up_flank | Extend or Flank GRanges |
| write_ranges | Write GRanges to file |