Microbiome Data Simulation

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Documentation for package ‘miaSim’ version 1.6.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.applyInterType	Generate pairs of interactions according to interaction types
.estimateAFromSimulations	Get the interspecies interaction matrix A using leave-one-out method
.eventTimes	generate a vector of times when events is happening
.generateSimulations	Generate multiple simulations and store them in a list
.getInteractions	Generate interactions according to five types of interactions and their weights
.isPosInt	check whether a number is a positive integer
.rdirichlet	Generate dirichlet random deviates
.replaceByZero	Replace one element with zero in a list.
powerlawA	Interaction matrix with Power-Law network adjacency matrix
randomA	Generate random interaction matrix for GLV model
randomE	Generate random efficiency matrix
simulateConsumerResource	Consumer-resource model simulation
simulateGLV	Generalized Lotka-Volterra (gLV) simulation
simulateHubbell	Hubbell's neutral model simulation
simulateHubbellRates	Hubbell's neutral model simulation applied to time series
simulateHubbellRates-method	Hubbell's neutral model simulation applied to time series
simulateHubbellRates-numeric	Hubbell's neutral model simulation applied to time series
simulateRicker	Generate time series with the Ricker model
simulateSOI	Self-Organised Instability model (SOI) simulation
simulateStochasticLogistic	Stochastic Logistic simulation