Time sensitive microRNA-mRNA integration, analysis and network
generation tool
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Documentation for package ‘TimiRGeN’ version 1.10.0
Help Pages
| addIds | addIds |
| addPrefix | addPrefix |
| clusterCheck | clusterCheck |
| clusterList | clusterList |
| combineGenes | combineGenes |
| createClusters | createClusters |
| createClusters2 | createClusters2 |
| cytoMake | cytoMake |
| dataMiningMatrix | dataMiningMatrix |
| diffExpressRes | diffExpressRes |
| dloadGmt | dloadGmt |
| dloadMirdb | dloadMirdb |
| dloadMirtarbase | dloadMirtarbase |
| dloadTargetscan | dloadTargetscan |
| eNames | eNames |
| enrichWiki | enrichWiki |
| e_list_mouse | e_list_mouse |
| genesList | genesList |
| getIdsMir | getIdsMir |
| getIdsMrna | getIdsMrna |
| gmtEnsembl | gmtEnsembl |
| hs_miR | Human microRNA data set |
| hs_mRNA | Human mRNA data set |
| hs_probes | hs_probes |
| linearRegr | linearRegr |
| long_data | Data from a longer time series (10 time points) |
| makeDynamic | makeDynamic |
| makeMapp | makeMapp |
| makeNet | makeNet |
| matrixFilter | matrixFilter |
| mirMrnaInt | mirMrnaInt |
| miRTarBase | miRTarBase dataset |
| mm_miR | Mouse microRNA data |
| mm_mRNA | Mouse microRNA data |
| multiReg | multiReg |
| quickBar | quickBar |
| quickCrossCorr | quickCrossCorr |
| quickDendro | quickDendro |
| quickDMap | quickDMap |
| quickFuzz | quickFuzz |
| quickHClust | quickHClust |
| quickMap | quickMap |
| quickNet | quickNet |
| quickPathwayTC | quickPathwayTC |
| quickReg | quickReg |
| quickTC | quickTC |
| quickTCPred | quickTCPred |
| reduceWiki | reduceWiki |
| returnCluster | returnCluster |
| savePlots | savePlots |
| significantVals | significantVals |
| startObject | startObject |
| turnPercent | turnPercent |
| UUO_data | UUO_data |
| wikiList | wikiList |
| wikiMatrix | wikiMatrix |
| wikiMrna | wikiMrna |
| w_list_mouse | Wikipathways lists for mouse produced by the wikiList function. |