Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

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Documentation for package ‘TMixClust’ version 1.22.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

TMixClust-package	The main usages of TMixClust
analyse_stability	Stability analysis, clustering evaluation and optimal solution selection
best_clust_toy_obj	TMixClust object containing the optimal clustering solution for the toy data with 3 clusters.
best_clust_yeast_obj	TMixClust object containing the optimal clustering solution for the yeast data.
generate_TMixClust_report	Generates a series of files containing a summary of the TMixClust analysis results
get_time_series_df	Extracts a time series data frame from a text file
get_time_series_df_bio	Extracts a time series data frame from a Bioconductor Biobase ExpressionSet object.
plot_silhouette	Generates a silhouette plot for a given clustering configuration.
plot_time_series_df	Plots all the time series stored in a data frame object
TMixClust	Clusters the time series data in a given number of groups
toy_data_df	Simulated time-series gene expression data