Transcriptome instability analysis
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Documentation for package ‘TIN’ version 1.32.0
Help Pages
| aberrantExonUsage | Calculations of relative aberrant exon usage amounts per sample (based on FIRMA scores) |
| clusterPlot | clusterPlot |
| correlation | Calculates the correlation between sample-wise amounts of aberrant exon usage and splicing factor expression levels |
| correlationPlot | correlationPlot |
| firmaAnalysis | Read CEL files and perform FIRMA analysis |
| geneAnnotation | geneAnnotation |
| geneSetCorrelation | Correlation between aberrant exon usage and expression levels for a number of gene sets. |
| geneSets | geneSets |
| posNegCorrPlot | posNegCorrPlot |
| probesetPermutations | Permutations of the samples at each probeset |
| readGeneSummaries | Read gene-level expression summaries |
| sampleSetFirmaScores | sampleSetFirmaScores |
| sampleSetGeneSummaries | sampleSetGeneSummaries |
| scatterPlot | Scatterplot showing relative amounts of aberrant exon usage per sample |
| splicingFactors | A list of 280 splicing factor genes |