An R package estimates the correlations of orthologs and transposable elements between two species

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Documentation for package ‘TEKRABber’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

appTEKRABber	Visualize TEKRABber results with shiny app
assay_tekcorrset	Access genes and transposable elements expression data
corrOrthologTE	Estimate correlation comparing orthologs and TEs
ctCorr	Normalized Gene/TE expression toy data in control and treatment in same species for correlation analysis
ctInputDE	Input expression data of gene/TE for differentially expressed analysis within same species
DECorrInputs	Generate all the input files for TEKRABber downstream analysis
DEgeneTE	Estimate differentially expressed genes and TEs
fetchDataHmChimp	Example output comparing human and chimpanzee data using orhtologScale()
hg38_panTro6_rmsk	Repeatmasker track annotations with human and chimpanzee
orthologScale	Normalized orthologous genes and TEs between two species
rcpp_corr	Estimate the correlation between genes and transposable elements
speciesCorr	A subsets of normalized Gene/TE expression data from human/chimpanzee brain RNA-seq for correlation analysis demonstration
speciesCounts	Gene/TE expression data from human/chimpanzee brain RNA-seq
TEKRABber	An R package estimates the correlations of orthologs and transposable elements between two species