| addCoordinates |
Add coordinates to Object Adds output of Spot Detector coordinates to Seurat object or SCE object created by createSeurat/createSCE. Details about how to use Spot Detector can be found: https://github.com/SpatialTranscriptomicsResearch/st_spot_detector |
| createSCE |
Create a SingleCellExperiment Object From Spatial Transcriptomics Data |
| createSeurat |
Create a Seurat Object From Spatial Transcriptomics Data |
| createVisiumSCE |
createVisiumSCE |
| markClusterCol |
markClusterCol |
| parseImage |
This function parses a HE image to use as the background for plots |
| removeSpots |
removeSpots |
| runShinySpaniel |
RunShinySpaniel |
| selectSpots |
selectSpots |
| spanielPlot |
Spatial Transcriptomics Plot |
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