Splice Interpreter of Transcripts
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Documentation for package ‘SPLINTER’ version 1.26.0
Help Pages
| acceptor.m | acceptor.m |
| addEnsemblAnnotation | addEnsemblAnnotation |
| annotateEvents | annotateEvents |
| callPrimer3 | callPrimer3 |
| checkPrimer | checkPrimer |
| compatible_cds | compatible_cds |
| compatible_tx | compatible_tx |
| donor.m | donor.m |
| eventOutcomeCompare | eventOutcomeCompare |
| eventOutcomeTranslate | eventOutcomeTranslate |
| eventPlot | eventPlot |
| extendROI | extendROI |
| extractSpliceEvents | extractSpliceEvents |
| extractSpliceSites | extractSpliceSites |
| findCompatibleEvents | findCompatibleEvents |
| findCompatibleExon | findCompatibleExon |
| findTX | findTX |
| getPCRsizes | getPCRsizes |
| getRegionDNA | getRegionDNA |
| insertRegion | insertRegion |
| makeROI | makeROI |
| makeUniqueIDs | makeUniqueIDs |
| pcr_result1 | pcr_result1 |
| plot_seqlogo | plotting sequence logo |
| primers | primers |
| psiPlot | psiPlot |
| region_minus_exon | region_minus_exon |
| removeRegion | removeRegion |
| roi | roi |
| shapiroAcceptor | shapiroAcceptor |
| shapiroDensity | shapiroDensity |
| shapiroDonor | shapiroDonor |
| splice_data | splice_data |
| splice_fasta | splice_fasta |
| splitPCRhit | splitPCRhit |
| thecds | thecds |
| theexons | theexons |
| valid_cds | valid_cds |
| valid_tx | valid_tx |