The Cancer Genome Atlas Data Integration

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Documentation for package ‘RTCGA’ version 1.30.0

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RTCGA-package The Caner Genome Atlas data integration
boxplotTCGA Create Boxplots for TCGA Datasets
checkTCGA Information About Datasets from TCGA Project
convertPANCAN12 Convert Data from RTCGA Family to Bioconductor Classes
convertTCGA Convert Data from RTCGA Family to Bioconductor Classes
datasetsTCGA RTCGA - The Family of R Packages with Data from The Cancer Genome Atlas Study
downloadTCGA Download TCGA Data
expressionsTCGA Gather Expressions for TCGA Datasets
heatmapTCGA Create Heatmaps for TCGA Datasets
infoTCGA Information About Cohorts from TCGA Project
installTCGA Install Data Packages from RTCGA Family
kmTCGA Plot Kaplan-Meier Estimates of Survival Curves for Survival Data
mutationsTCGA Gather Mutations for TCGA Datasets
pcaTCGA Plot Two Main Components of Principal Component Analysis
readTCGA Read TCGA data to the tidy Format
RTCGA The Caner Genome Atlas data integration
RTCGA.data RTCGA - The Family of R Packages with Data from The Cancer Genome Atlas Study
survivalTCGA Extract Survival Information from Datasets Included in RTCGA.clinical and RTCGA.clinical.20160128 Packages
theme_RTCGA RTCGA Theme for ggplot2