NormqPCR-package | Functions for normalisation of RT-qPCR data. |
Bladder | Bladder dataset of Andersen et al (2004) |
BladderRepro | Dataset of Andersen et al (2004) |
BladderRepro.qPCRBatch | Dataset of Andersen et al (2004) |
Colon | Colon dataset of Andersen et al (2004) |
combineTechReps | Combines Technical Replicates |
combineTechReps-method | Combines Technical Replicates |
combineTechRepsWithSD | Combines Technical Replicates |
combineTechRepsWithSD-method | Combines Technical Replicates |
ComputeNRQs | Compute Normalized Relative Quantities |
ComputeNRQs-method | Compute Normalized Relative Quantities |
ComputeNRQs-methods | Compute Normalized Relative Quantities |
CqValues | Compute Cq value and amplification efficiency |
CqValues-method | Compute Cq value and amplification efficiency |
CqValues-methods | Compute Cq value and amplification efficiency |
deltaCq | Perform normalization with a given housekeeping gene |
deltaCt | Perform normalization with a given housekeeping gene |
deltaCt-method | Perform normalization with a given housekeeping gene |
deltaCt-methods | Perform normalization with a given housekeeping gene |
deltaDeltaCq | Perform normalization and differential expression with given housekeeping gene |
deltaDeltaCq-method | Perform normalization and differential expression with given housekeeping gene |
deltaDeltaCq-methods | Perform normalization and differential expression with given housekeeping gene |
deltaDeltaCt | Perform normalization and differential expression with given housekeeping gene |
deltaDeltaCt-method | Perform normalization and differential expression with given housekeeping gene |
deltaDeltaCt-methods | Perform normalization and differential expression with given housekeeping gene |
geNorm | Data set of Vandesompele et al (2002) |
geNorm.qPCRBatch | Data set of Vandesompele et al (2002) |
geomMean | Geometric Mean |
makeAllNAs | Make all Cq values NA |
makeAllNAs-method | Make all Cq values NA |
makeAllNewVal | Make all Cq values NA |
makeAllNewVal-method | Make all Cq values NA |
NormqPCR | Functions for normalisation of RT-qPCR data. |
replaceAboveCutOff | Replace Cq values with new value |
replaceAboveCutOff-method | Replace Cq values with new value |
replaceNAs | Replace NAs with a given value |
replaceNAs-method | Replace NAs with a given value |
selectHKs | Selection of reference/housekeeping genes |
selectHKs-method | Selection of reference/housekeeping genes |
selectHKs-methods | Selection of reference/housekeeping genes |
stabMeasureM | Gene expression stability value M |
stabMeasureRho | Gene expression stability value rho |
stabMeasureRho-method | Gene expression stability value rho |
stabMeasureRho-methods | Gene expression stability value rho |