Learning from DNA to Predict Enhancers

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Documentation for package ‘LedPred’ version 1.34.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

createModel	Create the model with the optimal features
crm.features	This is data to be included in my package
evaluateModelPerformance	Evaluate model performances
feature.ranking	This is data to be included in my package
LedPred	Creates an SVM model given a feature matrix
mapFeaturesToCRMs	R interface to bed_to_matrix REST in server
mcTune	Tuning the SVM parameters
rankFeatures	Ranking the features according to their importance
scoreData	Predicting new regulatory regions
tuneFeatureNb	Selecting the optimal number of features