Make Biological Sense of Gene Set Enrichment Analysis Outputs

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Documentation for package ‘GSEAmining’ version 1.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

clust_groups	clust_groups
clust_group_cores	clust_group_cores
clust_group_terms	clust_group_terms
genesets_sel	Selected gene sets as test
gm_clust	gm_clust: GSEAmining cluster object
gm_dendplot	gm_dendplot: GSEAmining dendrogram plotter
gm_enrichcores	gm_enrichcores: GSEAmining core enrichment genes
gm_enrichreport	gm_enrichreport: GSEAmining Enrichment Report
gm_enrichterms	gm_enrichterms: GSEAmining enriched terms
gm_filter	gm_filter: GSEAmining GSEA output filter
stop_words	Stop words. Eliminates the first word of the gene sets from MSigDb that relate to the origin of the gene set. Additionally it eliminates words that do not add a lot of significance such as prepositions or adverbs among others.