Batch Effect Correction with Unknow Subtypes for scRNA-seq data

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Documentation for package ‘BUSseq’ version 1.6.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BUSseq-package	Batch Effect Correction with Unknow Subtypes for scRNA-seq data
baseline_expression_values	Obtain the Log-Scale Baseline Expression Levels from the Output of the 'BUSseq_MCMC' Function
BIC_BUSseq	Obtain BIC from the Output of the 'BUSseq_MCMC' Function
BUSseq	Batch Effect Correction with Unknow Subtypes for scRNA-seq data
BUSseqfits_example	An external example of the output of the 'BUSseq_MCMC'
BUSseq_MCMC	Condcut MCMC sampling and posterior inference for the BUSseq Model
celltypes	Obtain the Cell-type Indicators from the Output of the 'BUSseq_MCMC' Function
celltype_effects	Obtain the Cell-type Effects from the Output of the 'BUSseq_MCMC' Function
celltype_mean_expression	Obtain the Cell-Type-Specific Mean Expression Levels from the Output of the 'BUSseq_MCMC' Function
cell_effect_values	Obtain the cell-specific size effects from the Output of the 'BUSseq_MCMC' Function
corrected_read_counts	Generate the Corrected Read Count Matrix within the Output of the 'BUSseq_MCMC'
dropout_coefficient_values	Obtain the Coefficients of the Logistic Regression for the Dropout Events from the Output of the 'BUSseq_MCMC' Function
heatmap_data_BUSseq	Draw the Heatmap of the Log-scale Read Count Data for the Output of the 'BUSseq_MCMC' Function
imputed_read_counts	Obtain the Imputed Read Count Matrix from the Output of the 'BUSseq_MCMC' Function
intrinsic_genes_BUSseq	Obtain the Intrinsic Gene Indicators from the Output of the 'BUSseq_MCMC' Function
location_batch_effects	Obtain the Location Batch Effects from the Output of the 'BUSseq_MCMC' Function
overdispersions	Obtain the Overdispersion Parameters from the Output of the 'BUSseq_MCMC' Function
raw_read_counts	Obtain the Raw Read Count Matrix from the Output of the 'BUSseq_MCMC' Function