Visualising Set Enrichment Analysis Results
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Documentation for package ‘vissE’ version 1.8.0
Help Pages
| bhuvad_theme | Custom theme |
| characteriseGeneset | Functionally characterise a list of genes |
| computeMsigNetwork | Compute a network using computed gene set overlap |
| computeMsigOverlap | Compute gene set overlap |
| computeMsigWordFreq | Compute word frequencies for a single MSigDB collection |
| findMsigClusters | Identify gene-set clusters from a gene-set overlap network |
| getMsigBlacklist | Blacklist words for MSigDB gene set text mining |
| hgsc | The Hallmark collection from the MSigDB |
| plotGeneStats | Plot gene statistics for clusters of gene sets |
| plotMsigNetwork | Plot a gene set overlap network |
| plotMsigPPI | Plot PPI network for gene-set clusters identified using vissE |
| plotMsigWordcloud | Compute and plot word frequencies for multiple MSigDB collections |