Tomo-seq data analysis

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Documentation for package ‘tomoda’ version 1.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

corHeatmap	Correlation heatmap of sections
createTomo	Create an object representing tomo-seq data
createTomo-method	Create an object representing tomo-seq data
embedPlot	Embedding plot for sections
expHeatmap	Expression heatmap
findPeak	Find peak in a vector
findPeakGene	Find peak genes
geneCorHeatmap	Correlation heatmap of genes
geneEmbedPlot	Embedding plot for genes
hierarchClust	Hierarchical clustering across sections
kmeansClust	K-Means clustering across sections
linePlot	Line plot for expression traces
normalizeTomo	Normalize data
runPCA	Perform PCA
runTSNE	Perform TSNE
runUMAP	Perform UMAP
scaleTomo	Scale data
tomoMatrix	Create an object from matrix
tomoSummarizedExperiment	Create an object from SummarizedExperiment
zh.data	A raw read count matrix of zebrafish injured heart.