single-cell higher order testing
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Documentation for package ‘scHOT’ version 1.12.0
Help Pages
| .scHOT | scHOT class |
| liver | Liver trajectory example data |
| MOB_subset | MOB_subset spatial example data |
| params<- | Setter functions for scHOT objects |
| plotColouredExpression | plotColouredExpression |
| plotEgoNetwork | plotEgoNetwork |
| plotHigherOrderSequence | plotHigherOrderSequence |
| plotOrderedExpression | plotOrderedExpression |
| positionColData<- | Setter functions for scHOT objects |
| positionType<- | Setter functions for scHOT objects |
| scHOT | scHOT |
| scHOT-class | scHOT class |
| scHOT_addTestingScaffold | scHOT_addTestingScaffold |
| scHOT_buildFromMatrix | scHOT_buildFromMatrix |
| scHOT_buildFromSCE | scHOT_buildFromSCE |
| scHOT_calculateGlobalHigherOrderFunction | scHOT_calculateGlobalHigherOrderFunction |
| scHOT_calculateHigherOrderTestStatistics | scHOT_calculateHigherOrderTestStatistics |
| scHOT_estimatePvalues | scHOT_estimatePvalues |
| scHOT_output<- | Setter functions for scHOT objects |
| scHOT_performPermutationTest | scHOT_performPermutationTest |
| scHOT_plotPermutationDistributions | scHOT_plotPermutationDistributions |
| scHOT_setPermutationScaffold | scHOT_setPermutationScaffold |
| scHOT_setWeightMatrix | scHOT_setWeightMatrix |
| scHOT_stripOutput | scHOT_stripOutput |
| spatialWeightMatrix | spatialWeightMatrix |
| testingScaffold<- | Setter functions for scHOT objects |
| thin | thin |
| trajectoryWeightMatrix | trajectoryWeightMatrix |
| weightedPearson | weightedPearson |
| weightedSpearman | weightedSpearman |
| weightedVariance | weightedVariance |
| weightedZIKendall | weightedZIKendall |
| weightedZISpearman | weightedZISpearman |
| weightMatrix<- | Setter functions for scHOT objects |