PANDA Algorithm
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Documentation for package ‘pandaR’ version 1.32.0
Help Pages
| pandaR-package | pandaR: Passing Messages between Biological Networks to Refine Predicted Interactions. |
| calcDegree | Calculate regulatory network degree |
| calcDegreeDifference | Calculate difference in degrees |
| importPandaMatlab | Panda Matlab importer |
| multiplot | Multiple plots |
| panda | Passing Messages between Biological Networks to Refine Predicted Interactions |
| pandaR | pandaR: Passing Messages between Biological Networks to Refine Predicted Interactions. |
| pandaResult | Analysis result from PANDA algorithm on toy data |
| pandaResultPairs | Analysis result from PANDA algorithm on toy data converted into pairs |
| pandaToyData | Toy gene expression, motif, and ppi data |
| plotCommunityDetection | Community detection plot |
| plotGraph | Plot graph |
| plotZ | Comparison of Z scores between two PANDA runs |
| plotZbyTF | Plot Z by TF out-degree quantiles |
| print.panda | print.panda |
| subnetwork | Subnetwork |
| summary.panda | Summary.panda |
| targetedGenes | targetedGenes |
| testMotif | Check motif |
| topedges | Top edges |