omicRexposome-package |
omicRexposome: Package for exposome and omic data associatin and integration |
add_cls |
Method to add an ExposomeClust to a MultiDataSet |
add_cls-method |
Method to add an ExposomeClust to a MultiDataSet |
add_exp |
Method to add an ExposomeSet to a MultiDataSet |
add_exp-method |
Method to add an ExposomeSet to a MultiDataSet |
asr |
'ResultSet' for testing and illustration purpouses |
association |
# --- Method to perform an association study between transcriptome and exposom |
association-method |
# --- Method to perform an association study between transcriptome and exposom |
crossomics |
Function to perform a Transcriptome-Wide Association Study |
crossomics-method |
Function to perform a Transcriptome-Wide Association Study |
crs |
'ResultSet' for testing and illustration purpouses |
getIntegration |
Method to extrat integration-feature result from a ResultSet |
getIntegration-method |
Method to extrat integration-feature result from a ResultSet |
mds |
'MultiDataSet' for testing and illustration purpouses |
omicRexposome |
omicRexposome: Package for exposome and omic data associatin and integration |
plotAssociation |
Function to draw de result of an association study |
plotAssociation-method |
Function to draw de result of an association study |
plotHits |
Plot number of hits per result in ResultSet |
plotHits-method |
Plot number of hits per result in ResultSet |
plotIntegration |
Function to draw de result of an integration study |
plotIntegration-method |
Function to draw de result of an integration study |
plotLambda |
Plot lambda score for all results in a ResultSet |
plotLambda-method |
Plot lambda score for all results in a ResultSet |
snpToContinuous |
Transforms the discrete genotype from a 'snpSet' to a 'matrix' of a continuous variable. |
snpToContinuous-method |
Transforms the discrete genotype from a 'snpSet' to a 'matrix' of a continuous variable. |
tableHits |
Counts the number of hits on the results stored in a ResultSet |
tableHits-method |
Counts the number of hits on the results stored in a ResultSet |
tableLambda |
Compute a lambda score on the results stored in a ResultSet |
tableLambda-method |
Compute a lambda score on the results stored in a ResultSet |