Profiling and Analyzing Intrinsically Disordered Proteins in R

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Documentation for package ‘idpr’ version 1.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

chargeCalculationGlobal	Protein Charge Calculation, Globally
chargeCalculationLocal	Charge Calculation Along a Protein Sequence
chargeHydropathyPlot	Charge-Hydropathy Plot
Disorder40	Disorder-based Substitution Matrices.
Disorder60	Disorder-based Substitution Matrices.
Disorder85	Disorder-based Substitution Matrices.
DisorderMat	Disorder-based Substitution Matrices.
DUNMat	A Substitution Matrix for Aligning Intrinsically Disordered Proteins
EDSSMat	EDSSMat Disorder-based Substitution Matrices.
EDSSMat50	EDSSMat Disorder-based Substitution Matrices.
EDSSMat60	EDSSMat Disorder-based Substitution Matrices.
EDSSMat62	EDSSMat Disorder-based Substitution Matrices.
EDSSMat70	EDSSMat Disorder-based Substitution Matrices.
EDSSMat75	EDSSMat Disorder-based Substitution Matrices.
EDSSMat80	EDSSMat Disorder-based Substitution Matrices.
EDSSMat90	EDSSMat Disorder-based Substitution Matrices.
foldIndexR	Prediction of Intrinsic Disorder with FoldIndex method in R
GorillaTP53	Human Cellular tumor antigen p53 and homologs
hendersonHasselbalch	Henderson-Hasselbalch Equation
idpr	idpr: profiling and analyzing Intrinsically Disordered Proteins in R
idprofile	IDp PRofile From idpr Package
iupred	Prediction of Intrinsic Disorder with IUPred2A
iupredAnchor	Prediction of Intrinsic Disorder with IUPred2A
iupredRedox	Prediction of Intrinsic Disorder with IUPred2A
KDNorm	Kyte and Doolittle Scaled Hydropathy Index
meanScaledHydropathy	Calculate the Mean Scaled Hydropathy
netCharge	Protein Charge Calculation, Net Charge
pKaData	Sets of pKa values for Charged Amino Acids
scaledHydropathyGlobal	Protein Scaled Hydropathy Calculations
scaledHydropathyLocal	Calculate the Average Scaled Hydropathy of an Amino Acid Sequence
sequenceCheck	Sequence Check Function
sequenceMap	Sequence Map Function
sequenceMapCoordinates	Sequence Map Coordinates
sequencePlot	Sequence Plot
structuralTendency	Structural Tendency of Amino Acid Residues
structuralTendencyPlot	Plotting Structural Tendency of Amino Acid Sequence
TP53Sequences	Human Cellular tumor antigen p53 and homologs