iPath pipeline for detecting perturbed pathways at individual
level
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘iPath’ version 1.6.1
Help Pages
| density_fall | density fall plot |
| GSDB_example | example gene set database (GSDB) |
| GSEA | GSEA calculation |
| iES_cal2 | iES calculation Function |
| iES_surv | iES calculation Function |
| iES_survPlot | iES survival for a certain pathway |
| prad_cli | simulated clinical data for PRAD cancer patients |
| prad_exprs | expression matrix for PRAD cancer patients in TCGA |
| prad_inds | normal (0) and tumor (1) classes associated with PRAD expression data |
| rem_data | remove genes with 0 sd |
| setUp_BPPARAM | set up for the parallel computing for biocParallel. |
| water_fall | water fall plot |