Hierarchical ensemble method based on factor graph

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Documentation for package ‘fgga’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

fgga-package	FGGA: Factor Graph Gene ontology Annotation.
CfData	A set of characterized protein coding genes from the Cannis familiaris organism annotated to a target GO subgraph considering both experimental and electronic evidence.
createFolds	Data splitting function useful for binary classification tasks
fgga	Factor Graph Cross-Ontology Annotation model
fgga2bipartite	Forney Factor Graph model
fHierarchicalMeasures	Individual and hierarchical F-measures
fMeasures	Individual and hierarchical F-measures
fMeasuresByLevel	Individual and hierarchical F-measures
maxDistancegraphOnto	Maximum distance for a graph
msgFGGA	Message passing algorithm between nodes of the Forney Factor Graph
preCoreFG	Transitive closure processing of a cross-ontology DAG
svmOnto	Ontology-term predictions by binary SVM classifiers
svmTrain	Binary SVM classification models for individual Ontology-term predictions
tableTPG	Valid configurations for hidden variable nodes in a Forney Factor Graph
varianceOnto	The variance of the gaussian learning noise at individual Ontology-terms