Multiplexes Isobaric Mass Tagged-based Kinetics Data for Network
Analysis
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Documentation for package ‘XINA’ version 1.18.0
Help Pages
| add_legend | add_legend |
| alluvial_enriched | alluvial_enriched |
| alluvial_enrichment_tests | alluvial_enrichment_tests |
| calculate_centrality_scores | calculate_centrality_scores |
| default_size | default_size |
| draw_alluvial_plot | draw_alluvial_plot |
| example_clusters | Randomly generated example datasets for XINA users. A dataset containing the XINA clustering results. |
| extract_data_column | extract_data_column |
| find_similar_clusters | find_similar_clusters |
| generate_count_table | generate_count_table |
| generate_superset | generate_superset |
| get_colors | get_colors |
| get_color_for_nodes | get_color_for_nodes |
| get_comigrations_by_name | get_comigrations_by_name |
| get_condition_biased_comigrations | get_condition_biased_comigrations |
| get_layout | get_layout |
| get_mTOR_proteins | get_mTOR_proteins |
| get_random_data | get_random_data |
| get_stats | get_stats |
| get_theme_blank | get_theme_blank |
| get_unknown_ppi_nodes | get_unknown_ppi_nodes |
| gn | A character vector containing 19,396 human genes This is for the randome data generation of XINA |
| gn_desc | A character vector containing 19,396 human gene descriptions This is for the randome data generation of XINA |
| hprd_ppi | Protein-protein interaction resource downloaded from HPRD DB A data frame containing HRPD protein-protein interaction data |
| length2 | length2 |
| load_previous_results | load_previous_results |
| make_random_xina_data | make_random_xina_data |
| mutate_colors | mutate_colors |
| organize_clusters | organize_clusters |
| plot_clusters | plot_clusters |
| plot_clusters_all | plot_clusters_all |
| plot_condition_compositions | plot_condition_compositions |
| plot_enrichment_results | plot_enrichment_results |
| plot_NA | plot_NA |
| rank_centrality | rank_centrality |
| string_example | Protein-protein interaction resource downloaded from STRING DB for XINA's example dataset A data frame containing protein-protein interactions |
| xina_analysis | xina_analysis |
| xina_clustering | xina_clustering |
| xina_enrichment | xina_enrichment |
| xina_plot_all | xina_plot_all |
| xina_plot_bycluster | xina_plot_bycluster |
| xina_plot_single | xina_plot_single |
| xina_result_example | Previously processed xina analysis using XINA's random example data A list containing 'xina_analysis' results |