Systems EPigenomics Inference of Regulatory Activity

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Documentation for package ‘SEPIRA’ version 1.20.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ComputePCOR	Compute partial correlation coefficient
GeneExp	RNA-seq data matrix from GTEx
InferTFact	Estimate TF activity score in a sample
InferTFactPRL	Estimate TF activity score in different samples
LimmaFn	Do differential gene expression/ differential DNA methylation analysis
LUSCexp	LUSC RNA-seq dataset
LUSCmeth	LUSC DNA methylation dataset
sepiraInfNet	Infer tissue-specific regulatory network from gene expression data
sepiraRegAct	Infer TF activity from gene expression/ DNA methylation profile
TFeid	Transcription factor genes annotated using Entrez gene ID
VALexp	RNA-seq data matrix from ProteinAtlas project