Tools for Omics Data Analysis

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Documentation for package ‘POMA’ version 1.9.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cor_pmat	Correlation P-Values
flattenCorrMatrix	Flatten Correlation Matrix
PomaBoxplots	Classical Boxplots
PomaClust	Cluster Analysis
PomaCorr	Correlation Analysis
PomaDensity	Distribution Plot
PomaDESeq	Differential expression analysis based on the Negative Binomial distribution
PomaEDA	Automatic Exploratory Data Analysis HTML Report
PomaHeatmap	Classical Heatmap
PomaImpute	Collection of Imputation Methods for Mass Spectrometry Data
PomaLasso	Lasso, Ridge and Elasticnet Regularized Generalized Linear Models for Binary Outcomes
PomaLimma	Easy Implementation of 'limma' Bioconductor Package
PomaMultivariate	Multivariate Statistical Methods for Mass Spectrometry Data
PomaNorm	Collection of Normalization Methods for Mass Spectrometry Data
PomaOddsRatio	Logistic Regression Model Odds Ratios
PomaOutliers	Remove and Analyze Outliers
PomaPCR	Principal Components Regression
PomaRandForest	Classification Random Forest
PomaRankProd	Rank Product/Rank Sum Analysis for Mass Spectrometry Data
PomaSummarizedExperiment	Convert data frames to a SummarizedExperiment Object
PomaUMAP	Dimensionality Reduction with UMAP
PomaUnivariate	Univariate Statistical Methods for Mass Spectrometry Data
PomaVolcano	Volcano Plot
st000284	Colorectal Cancer Detection Using Targeted Serum Metabolic Profiling
st000336	Targeted LC/MS of urine from boys with DMD and controls