MEIGO - MEtaheuristics for bIoinformatics Global Optimization

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Documentation for package ‘MEIGOR’ version 1.33.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BayesFit-package	BayesFit
essR-package	Global optimization algorithm for MINLPs based on Scatter Search
MEIGOR-package	Global optimization Toolbox
BayesFit	BayesFit
CeSSR	Global optimization algorithm for MINLPs based on Scatter Search using a Cooperative Strategy
CeVNSR	Global optimization algorithm for MINLPs based on VNS using a Cooperative Strategy
cnolist	A CNOlist from CellNOptR paclage
cur_params	Current values of all model parameters
dhc	Local search algorithm within eSS
essR	Global optimization algorithm for MINLPs based on Scatter Search
essR_multistart	Multistart function for eSS
eucl_dist	Computes the euclidean distance between the rows of two different matrices
ith_essR	Auxiliary function to perform parallel runs
ith_VNSR	Auxiliary function to perform parallel runs
MEIGO	MEIGO main function
model	A model from CellNoptR
nls_fobj	Auxiliary function to evaluate constraints
optim_fobj	Gateway function to evaluate the objective function when the local solvers are invoked.
paramsOpt	Optimal parameters for simulation with CNORode
runBayesFit	Running the BayesFit optimisation
rvnds_hamming	Main VNS function
rvnds_local	Local search in VNS
solnp_eq	Gateway function to evaluate the equality constraints when solnp is invoked as local solver
solnp_fobj	Gateway function to evaluate the objective function when solnp is invoked as local solver
solnp_ineq	Gateway function to evaluate the inequality constraints when solnp is invoked as local solver
ssm_beyond	Function that expands the search direction when a good offspring solution has been found
ssm_defaults	Sets the default options for eSSR
ssm_evalfc	Gateway function to evaluate the objective function in essR
ssm_isdif2	Calculates relative errors between two vectors
ssm_localsolver	Configure local solver
ssm_optset	Assigns values to the options defined by the user
ssm_penalty_function	Calculates the penalized objective function in constrained problems
ssm_round_int	Rounds variables declared as integer of binary
vns_defaults	Default options for VNS
vns_optset	Set VNS options