BayesFit-package |
BayesFit |
essR-package |
Global optimization algorithm for MINLPs based on Scatter Search |
MEIGOR-package |
Global optimization Toolbox |
BayesFit |
BayesFit |
CeSSR |
Global optimization algorithm for MINLPs based on Scatter Search using a Cooperative Strategy |
CeVNSR |
Global optimization algorithm for MINLPs based on VNS using a Cooperative Strategy |
cnolist |
A CNOlist from CellNOptR paclage |
cur_params |
Current values of all model parameters |
dhc |
Local search algorithm within eSS |
essR |
Global optimization algorithm for MINLPs based on Scatter Search |
essR_multistart |
Multistart function for eSS |
eucl_dist |
Computes the euclidean distance between the rows of two different matrices |
ith_essR |
Auxiliary function to perform parallel runs |
ith_VNSR |
Auxiliary function to perform parallel runs |
MEIGO |
MEIGO main function |
model |
A model from CellNoptR |
nls_fobj |
Auxiliary function to evaluate constraints |
optim_fobj |
Gateway function to evaluate the objective function when the local solvers are invoked. |
paramsOpt |
Optimal parameters for simulation with CNORode |
runBayesFit |
Running the BayesFit optimisation |
rvnds_hamming |
Main VNS function |
rvnds_local |
Local search in VNS |
solnp_eq |
Gateway function to evaluate the equality constraints when solnp is invoked as local solver |
solnp_fobj |
Gateway function to evaluate the objective function when solnp is invoked as local solver |
solnp_ineq |
Gateway function to evaluate the inequality constraints when solnp is invoked as local solver |
ssm_beyond |
Function that expands the search direction when a good offspring solution has been found |
ssm_defaults |
Sets the default options for eSSR |
ssm_evalfc |
Gateway function to evaluate the objective function in essR |
ssm_isdif2 |
Calculates relative errors between two vectors |
ssm_localsolver |
Configure local solver |
ssm_optset |
Assigns values to the options defined by the user |
ssm_penalty_function |
Calculates the penalized objective function in constrained problems |
ssm_round_int |
Rounds variables declared as integer of binary |
vns_defaults |
Default options for VNS |
vns_optset |
Set VNS options |