Manages subsets of data with Bioconductor Experiment objects
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Documentation for package ‘ExperimentSubset’ version 1.10.0
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| .AssaySubset | An S4 class to manage subset representation. |
| .SubsetRangedSummarizedExperiment | An S4 class for 'RangedSummarizedExperiment' objects with added support for subsets. |
| .SubsetSingleCellExperiment | An S4 class for 'SingleCellExperiment' objects with added support for subsets. |
| .SubsetSpatialExperiment | An S4 class for 'SpatialExperiment' objects with added support for subsets. |
| .SubsetSummarizedExperiment | An S4 class for 'SummarizedExperiment' objects with added support for subsets. |
| .SubsetTreeSummarizedExperiment | An S4 class for 'TreeSummarizedExperiment' objects with added support for subsets. |
| AssaySubset | AssaySubset constructor |
| AssaySubset-class | An S4 class to manage subset representation. |
| createSubset | Subset creation method for ExperimentSubset objects |
| createSubset-method | Subset creation method for ExperimentSubset objects |
| ExperimentSubset | ExperimentSubset constructor |
| getSubsetAssay | Get subset assay from an 'ExperimentSubset' object. |
| getSubsetAssay-method | Get subset assay from an 'ExperimentSubset' object. |
| reducedDimNames | reducedDimNames |
| reducedDimNames-method | reducedDimNames |
| reducedDimNames<- | reducedDimNames<- |
| reducedDimNames<--method | reducedDimNames<- |
| reducedDims<- | reducedDims<- |
| reducedDims<--method | reducedDims<- |
| setSubsetAssay | Method for storing new assays inside subsets in ExperimentSubset objects |
| setSubsetAssay-method | Method for storing new assays inside subsets in ExperimentSubset objects |
| subsetAssayCount | Count method for subset assays in ExperimentSubset objects |
| subsetAssayCount-method | Count method for subset assays in ExperimentSubset objects |
| subsetAssayNames | Name retrieval method for all subset assays in ExperimentSubset objects |
| subsetAssayNames-method | Name retrieval method for all subset assays in ExperimentSubset objects |
| subsetColData | Accessor method for colData from subsets in ExperimentSubset objects |
| subsetColData-method | Accessor method for colData from subsets in ExperimentSubset objects |
| subsetColData<- | Accessor method for colData from subsets in ExperimentSubset objects |
| subsetColData<--method | Accessor method for colData from subsets in ExperimentSubset objects |
| subsetColLinks | Accessor method for colLinks from subsets in ExperimentSubset objects |
| subsetColLinks-method | Accessor method for colLinks from subsets in ExperimentSubset objects |
| subsetColnames | subsetColnames |
| subsetColnames-method | subsetColnames |
| subsetColnames<- | subsetColnames |
| subsetColnames<--method | subsetColnames |
| subsetCount | Subset count method for ExperimentSubset objects |
| subsetCount-method | Subset count method for ExperimentSubset objects |
| subsetDim | Get dimensions of subsets in ExperimentSubset objects |
| subsetDim-method | Get dimensions of subsets in ExperimentSubset objects |
| subsetNames | Get names of only the subsets in ExperimentSubset objects |
| subsetNames-method | Get names of only the subsets in ExperimentSubset objects |
| subsetParent | Subset parent hierarchy retrieval method for ExperimentSubset objects |
| subsetParent-method | Subset parent hierarchy retrieval method for ExperimentSubset objects |
| SubsetRangedSummarizedExperiment-class | An S4 class for 'RangedSummarizedExperiment' objects with added support for subsets. |
| subsetRowData | Accessor method for rowData from subsets in ExperimentSubset objects |
| subsetRowData-method | Accessor method for rowData from subsets in ExperimentSubset objects |
| subsetRowData<- | Accessor method for rowData from subsets in ExperimentSubset objects |
| subsetRowData<--method | Accessor method for rowData from subsets in ExperimentSubset objects |
| subsetRowLinks | Accessor method for rowLinks from subsets in ExperimentSubset objects |
| subsetRowLinks-method | Accessor method for rowLinks from subsets in ExperimentSubset objects |
| subsetRownames | subsetRownames |
| subsetRownames-method | subsetRownames |
| subsetRownames<- | subsetRownames |
| subsetRownames<--method | subsetRownames |
| SubsetSingleCellExperiment-class | An S4 class for 'SingleCellExperiment' objects with added support for subsets. |
| subsetSpatialCoords | Accessor method for spatialCoords from subsets in ExperimentSubset objects |
| subsetSpatialCoords-method | Accessor method for spatialCoords from subsets in ExperimentSubset objects |
| subsetSpatialData | Accessor method for spatialData from subsets in ExperimentSubset objects |
| subsetSpatialData-method | Accessor method for spatialData from subsets in ExperimentSubset objects |
| subsetSpatialData<- | Accessor method for spatialData from subsets in ExperimentSubset objects |
| subsetSpatialData<--method | Accessor method for spatialData from subsets in ExperimentSubset objects |
| SubsetSpatialExperiment-class | An S4 class for 'SpatialExperiment' objects with added support for subsets. |
| SubsetSummarizedExperiment-class | An S4 class for 'SummarizedExperiment' objects with added support for subsets. |
| subsetSummary | Method for displaying 'child-parent' link structure of subsets in ExperimentSubset objects |
| subsetSummary-method | Method for displaying 'child-parent' link structure of subsets in ExperimentSubset objects |
| SubsetTreeSummarizedExperiment-class | An S4 class for 'TreeSummarizedExperiment' objects with added support for subsets. |