Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression


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Documentation for package ‘AMARETTO’ version 1.16.0

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AMARETTO_CreateModuleData AMARETTO_CreateModuleData
AMARETTO_CreateRegulatorPrograms AMARETTO_CreateRegulatorPrograms
AMARETTO_Download AMARETTO_Download
AMARETTO_EvaluateTestSet AMARETTO_EvaluateTestSet
AMARETTO_ExportResults AMARETTO_ExportResults
AMARETTO_HTMLreport AMARETTO_HTMLreport
AMARETTO_Initialize AMARETTO_Initialize (version: reorder and filter MA_Matrix)
AMARETTO_Preprocess AMARETTO_Preprocess
AMARETTO_Run AMARETTO_Run Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.
AMARETTO_VisualizeModule AMARETTO_VisualizeModule
BatchData BatchData
Driver_Genes Driver_Genes
MsigdbMapping MsigdbMapping
plot_run_history Title plot_run_history
ProcessedDataLIHC ProcessedDataLIHC
read_gct read_gct