This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ptairData.
Bioconductor version: 3.16
The package ptairData contains two raw datasets from Proton-Transfer-Reaction Time-of-Flight mass spectrometer acquisitions (PTR-TOF-MS), in the HDF5 format. One from the exhaled air of two volunteer healthy individuals with three replicates, and one from the cell culture headspace from two mycobacteria species and one control (culture medium only) with two replicates. Those datasets are used in the examples and in the vignette of the ptairMS package (PTR-TOF-MS data pre-processing). There are also used to gererate the ptrSet in the ptairMS data : exhaledPtrset and mycobacteriaSet
Author: camille Roquencourt [aut, cre]
Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>
Citation (from within R,
enter citation("ptairData")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ptairData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ptairData")
HTML | R Script | PTR-TOF-MS dataset |
Reference Manual | ||
Text | NEWS |
biocViews | CellCulture, ExperimentData, MassSpectrometryData |
Version | 1.6.0 |
License | GPL-3 |
Depends | |
Imports | rhdf5, signal, stats, graphics |
LinkingTo | |
Suggests | knitr, rmarkdown, testthat, BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/camilleroquencourt/ptairData/issues |
Depends On Me | |
Imports Me | |
Suggests Me | ptairMS |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | ptairData_1.6.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/ptairData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ptairData |
Package Short Url | https://bioconductor.org/packages/ptairData/ |
Package Downloads Report | Download Stats |
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