EpiMix.data

DOI: 10.18129/B9.bioc.EpiMix.data  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see EpiMix.data.

Data for the EpiMix package

Bioconductor version: 3.16

Supporting data for the EpiMix R package. It include: - HM450_lncRNA_probes.rda - HM450_miRNA_probes.rda - EPIC_lncRNA_probes.rda - EPIC_miRNA_probes.rda - EpigenomeMap.rda - LUAD.sample.annotation - TCGA_BatchData - MET.data - mRNA.data - microRNA.data - lncRNA.data - Sample_EpiMixResults_lncRNA - Sample_EpiMixResults_miRNA - Sample_EpiMixResults_Regular - lncRNA expression data of tumors from TCGA that are stored in the ExperimentHub.

Author: Yuanning Zheng [aut, cre]

Maintainer: Yuanning Zheng <eric2021 at stanford.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EpiMix.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EpiMix.data")

 

HTML	R Script	vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Genome, RNASeqData
Version	1.0.0
License	GPL-3
Depends	R (>= 4.2.0), ExperimentHub(>= 0.99.6)
Imports
LinkingTo
Suggests	rmarkdown, knitr
SystemRequirements
Enhances
URL
BugReports	https://github.com/gevaertlab/EpiMix/issues
Depends On Me	EpiMix
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EpiMix.data_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/EpiMix.data
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EpiMix.data
Package Short Url	https://bioconductor.org/packages/EpiMix.data/
Package Downloads Report	Download Stats