synaptome.data

DOI: 10.18129/B9.bioc.synaptome.data  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see synaptome.data.

AnnotationData for Synaptome.DB package

Bioconductor version: 3.16

The package provides access to the copy of the Synaptic proteome database. It was designed as an accompaniment for Synaptome.DB package. Database provides information for specific synaptic genes and allows building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions. In the current update we added 6 more synaptic proteome studies, which resulted in total of 64 studies. We introduced Synaptic Vesicle as a separate compartment. We also added coding mutations for Autistic Spectral disorder and Epilepsy collected from publicly available databases.

Author: Anatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut]

Maintainer: Oksana Sorokina <oksana.sorokina at ed.ac.uk>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("synaptome.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("synaptome.data")

 

HTML	R Script	data_vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation
Version	0.99.6
License	Artistic-2.0
Depends	R (>= 3.5.0), AnnotationHub
Imports
LinkingTo
Suggests	BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo
SystemRequirements
Enhances
URL
BugReports	https://github.com/lptolik/synaptome.db/issues/
Depends On Me	synaptome.db
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	synaptome.data_0.99.6.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/synaptome.data/
Package Downloads Report	Download Stats