BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor.

Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected minor alleles (dbSNP151)

Bioconductor version: 3.16

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Only common single nucleotide variants (SNVs) with at least one alternate allele with frequency greater than 0.01 were considered. For SNVs with more than 1 alternate allele, the most frequent allele was chosen as the minor allele to be injected into the reference genome.

Author: Jean-Philippe Fortin

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	0.0.9999
License	CC BY-NC-ND 4.0
Depends	R (>= 3.5.0), BSgenome(>= 1.56.0)
Imports
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor_0.0.9999.tar.gz
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Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor/
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