## ----------------------------------------------------------------------------- if (!"AnVILPublish" %in% rownames(installed.packages())) BiocManager::install("AnVILPublish") ## ---- eval = FALSE------------------------------------------------------------ # AnVIL::gcloud_exists() ## ---- eval = FALSE------------------------------------------------------------ # AnVIL::gcloud_account() # AnVIL::gcloud_project() ## ---- eval = FALSE------------------------------------------------------------ # system2("quarto", "--version") ## ---- eval = FALSE------------------------------------------------------------ # system2("notedown", "--version") ## ---- eval = FALSE------------------------------------------------------------ # AnVILPublish::as_workspace( # "path/to/package", # "bioconductor-rpci-anvil", # i.e., billing account # create = TRUE # use update = TRUE for an existing workspace # ) ## ---- eval = FALSE------------------------------------------------------------ # AnVILPublish::as_workspace( # "path/to/directory", # directory containing DESCRIPTION file # "bioconductor-rpci-anvil", # create = TRUE # ) ## ---- eval = FALSE------------------------------------------------------------ # AnVILPublish::as_notebook( # "paths/to/files.Rmd", # "bioconductor-rpci-anvil", # i.e., billing account # "Bioconductor-Package-Foo", # Workspace name # update = FALSE # make notebooks, but do not update workspace # ) ## ---- eval = FALSE------------------------------------------------------------ # AnVILPublish::add_access( # "bioconductor-rpci-anvil", # "Bioconductor-Package-Foo" # ) ## ---- eval = FALSE------------------------------------------------------------ # knitr::opts_chunk$set(eval=FALSE) # rmarkdown::render(..., md_document()) ## ----sessionInfo-------------------------------------------------------------- sessionInfo()