oppti

DOI: 10.18129/B9.bioc.oppti  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see oppti.

Outlier Protein and Phosphosite Target Identifier

Bioconductor version: 3.16

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("oppti")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oppti")

 

HTML	R Script	Outlier Protein and Phosphosite Target Identifier
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version	1.12.0
In Bioconductor since	BioC 3.10 (R-3.6) (3.5 years)
License	MIT
Depends	R (>= 3.5)
Imports	limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist
LinkingTo
Suggests	markdown
SystemRequirements
Enhances
URL	https://github.com/Huang-lab/oppti
BugReports	https://github.com/Huang-lab/oppti/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	oppti_1.12.0.tar.gz
Windows Binary	oppti_1.12.0.zip (64-bit only)
macOS Binary (x86_64)	oppti_1.12.0.tgz
macOS Binary (arm64)	oppti_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/oppti
Bioc Package Browser	https://code.bioconductor.org/browse/oppti/
Package Short Url	https://bioconductor.org/packages/oppti/
Package Downloads Report	Download Stats