muscle

DOI: 10.18129/B9.bioc.muscle  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see muscle.

Multiple Sequence Alignment with MUSCLE

Bioconductor version: 3.16

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("muscle")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscle")

 

PDF	R Script	A guide to using muscle
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software
Version	3.40.0
In Bioconductor since	BioC 3.1 (R-3.2) (8 years)
License	Unlimited
Depends	Biostrings
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.drive5.com/muscle/
Depends On Me
Imports Me	ptm
Suggests Me	geneHapR, seqmagick
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	muscle_3.40.0.tar.gz
Windows Binary	muscle_3.40.0.zip
macOS Binary (x86_64)	muscle_3.40.0.tgz
macOS Binary (arm64)	muscle_3.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/muscle
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/muscle
Bioc Package Browser	https://code.bioconductor.org/browse/muscle/
Package Short Url	https://bioconductor.org/packages/muscle/
Package Downloads Report	Download Stats