msmsEDA

DOI: 10.18129/B9.bioc.msmsEDA  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see msmsEDA.

Exploratory Data Analysis of LC-MS/MS data by spectral counts

Bioconductor version: 3.16

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Author: Josep Gregori, Alex Sanchez, and Josep Villanueva

Maintainer: Josep Gregori <josep.gregori at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msmsEDA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msmsEDA")

 

PDF	R Script	msmsEDA: Batch effects detection in LC-MSMS experiments
PDF		Reference Manual

Details

biocViews	ImmunoOncology, MassSpectrometry, Proteomics, Software
Version	1.36.0
In Bioconductor since	BioC 2.13 (R-3.0) (9.5 years)
License	GPL-2
Depends	R (>= 3.0.1), MSnbase
Imports	MASS, gplots, RColorBrewer
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	msmsTests
Imports Me
Suggests Me	Harman, RforProteomics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	msmsEDA_1.36.0.tar.gz
Windows Binary	msmsEDA_1.36.0.zip
macOS Binary (x86_64)	msmsEDA_1.36.0.tgz
macOS Binary (arm64)	msmsEDA_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/msmsEDA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/msmsEDA
Bioc Package Browser	https://code.bioconductor.org/browse/msmsEDA/
Package Short Url	https://bioconductor.org/packages/msmsEDA/
Package Downloads Report	Download Stats