methylInheritance

DOI: 10.18129/B9.bioc.methylInheritance  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see methylInheritance.

Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Bioconductor version: 3.16

Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.

Author: Astrid DeschĂȘnes [cre, aut] , Pascal Belleau [aut] , Arnaud Droit [aut]

Maintainer: Astrid DeschĂȘnes <adeschen at hotmail.com>

Citation (from within R, enter citation("methylInheritance")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylInheritance")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylInheritance")

 

HTML R Script Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
PDF   Reference Manual
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Details

biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version 1.22.0
In Bioconductor since BioC 3.5 (R-3.4) (6 years)
License Artistic-2.0
Depends R (>= 3.5)
Imports methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors, methods, parallel, ggplot2, gridExtra, rebus
LinkingTo
Suggests BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim
SystemRequirements
Enhances
URL https://github.com/adeschen/methylInheritance
BugReports https://github.com/adeschen/methylInheritance/issues
Depends On Me
Imports Me
Suggests Me methInheritSim
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methylInheritance_1.22.0.tar.gz
Windows Binary methylInheritance_1.22.0.zip
macOS Binary (x86_64) methylInheritance_1.22.0.tgz
macOS Binary (arm64) methylInheritance_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methylInheritance
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methylInheritance
Bioc Package Browser https://code.bioconductor.org/browse/methylInheritance/
Package Short Url https://bioconductor.org/packages/methylInheritance/
Package Downloads Report Download Stats

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