meshr

DOI: 10.18129/B9.bioc.meshr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see meshr.

Tools for conducting enrichment analysis of MeSH

Bioconductor version: 3.16

A set of annotation maps describing the entire MeSH assembled using data from MeSH.

Author: Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("meshr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("meshr")

 

HTML	R Script	AnnotationHub-style MeSH ORA Framework from BioC 3.14
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Software, Statistics
Version	2.4.0
In Bioconductor since	BioC 2.14 (R-3.1) (9 years)
License	Artistic-2.0
Depends	R (>= 4.1.0)
Imports	markdown, rmarkdown, BiocStyle, knitr, methods, stats, utils, fdrtool, MeSHDbi, Category, S4Vectors, BiocGenerics, RSQLite
LinkingTo
Suggests
SystemRequirements
Enhances
URL
BugReports	https://github.com/rikenbit/meshr/issues
Depends On Me
Imports Me	scTensor
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	meshr_2.4.0.tar.gz
Windows Binary	meshr_2.4.0.zip
macOS Binary (x86_64)	meshr_2.4.0.tgz
macOS Binary (arm64)	meshr_2.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/meshr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/meshr
Bioc Package Browser	https://code.bioconductor.org/browse/meshr/
Package Short Url	https://bioconductor.org/packages/meshr/
Package Downloads Report	Download Stats