illuminaio

DOI: 10.18129/B9.bioc.illuminaio  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see illuminaio.

Parsing Illumina Microarray Output Files

Bioconductor version: 3.16

Tools for parsing Illumina's microarray output files, including IDAT.

Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("illuminaio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("illuminaio")

 

PDF		Description of Encrypted IDAT Format
PDF	R Script	Introduction to illuminaio
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software
Version	0.40.0
In Bioconductor since	BioC 2.12 (R-3.0) (10 years)
License	GPL-2
Depends
Imports	base64
LinkingTo
Suggests	RUnit, BiocGenerics, IlluminaDataTestFiles(>= 1.0.2), BiocStyle
SystemRequirements
Enhances
URL	https://github.com/HenrikBengtsson/illuminaio
BugReports	https://github.com/HenrikBengtsson/illuminaio/issues
Depends On Me	EGSEA123, normalize450K, RnBeads, wateRmelon
Imports Me	beadarray, bigmelon, ChAMP, crlmm, ENmix, methylumi, minfi, sesame
Suggests Me	limma
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	illuminaio_0.40.0.tar.gz
Windows Binary	illuminaio_0.40.0.zip
macOS Binary (x86_64)	illuminaio_0.40.0.tgz
macOS Binary (arm64)	illuminaio_0.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/illuminaio
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/illuminaio
Bioc Package Browser	https://code.bioconductor.org/browse/illuminaio/
Package Short Url	https://bioconductor.org/packages/illuminaio/
Package Downloads Report	Download Stats