hmdbQuery

DOI: 10.18129/B9.bioc.hmdbQuery  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see hmdbQuery.

utilities for exploration of human metabolome database

Bioconductor version: 3.16

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hmdbQuery")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hmdbQuery")

 

HTML	R Script	hmdbQuery: working with Human Metabolome Database (hmdb.ca)
PDF		Reference Manual

Details

biocViews	Infrastructure, Metabolomics, Software
Version	1.18.0
In Bioconductor since	BioC 3.7 (R-3.5) (5 years)
License	Artistic-2.0
Depends	R (>= 3.5), XML
Imports	S4Vectors, methods, utils
LinkingTo
Suggests	knitr, annotate, gwascat, testthat, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	hmdbQuery_1.18.0.tar.gz
Windows Binary	hmdbQuery_1.18.0.zip
macOS Binary (x86_64)	hmdbQuery_1.18.0.tgz
macOS Binary (arm64)	hmdbQuery_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/hmdbQuery
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hmdbQuery
Bioc Package Browser	https://code.bioconductor.org/browse/hmdbQuery/
Package Short Url	https://bioconductor.org/packages/hmdbQuery/
Package Downloads Report	Download Stats