goProfiles

DOI: 10.18129/B9.bioc.goProfiles  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see goProfiles.

goProfiles: an R package for the statistical analysis of functional profiles

Bioconductor version: 3.16

The package implements methods to compare lists of genes based on comparing the corresponding 'functional profiles'.

Author: Alex Sanchez, Jordi Ocana and Miquel Salicru

Maintainer: Alex Sanchez <asanchez at ub.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("goProfiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goProfiles")

 

PDF	R Script	goProfiles Vignette
PDF		goProfiles-comparevisual.pdf
PDF		goProfiles-plotProfileMF.pdf
PDF		Reference Manual

Details

biocViews	Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version	1.60.0
In Bioconductor since	BioC 2.2 (R-2.7) (15 years)
License	GPL-2
Depends	Biobase, AnnotationDbi, GO.db, CompQuadForm, stringr
Imports
LinkingTo
Suggests	org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	goSorensen
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	goProfiles_1.60.0.tar.gz
Windows Binary	goProfiles_1.60.0.zip (64-bit only)
macOS Binary (x86_64)	goProfiles_1.60.0.tgz
macOS Binary (arm64)	goProfiles_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/goProfiles
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/goProfiles
Bioc Package Browser	https://code.bioconductor.org/browse/goProfiles/
Package Short Url	https://bioconductor.org/packages/goProfiles/
Package Downloads Report	Download Stats