DOI: 10.18129/B9.bioc.geneplast  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see geneplast.

Evolutionary and plasticity analysis of orthologous groups

Bioconductor version: 3.16

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

Author: Rodrigo Dalmolin, Mauro Castro

Maintainer: Mauro Castro <mauro.a.castro at>

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biocViews GeneRegulation, Genetics, Software, SystemsBiology
Version 1.24.1
In Bioconductor since BioC 3.4 (R-3.3) (6.5 years)
License GPL (>= 2)
Depends R (>= 4.0), methods
Imports igraph, snow, ape, grDevices, graphics, stats, utils, data.table
Suggests RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown, Fletcher2013b,,, ggplot2, ggpubr, plyr
Depends On Me
Imports Me
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