DOI: 10.18129/B9.bioc.condiments  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see condiments.

Differential Topology, Progression and Differentiation

Bioconductor version: 3.16

This package encapsulate many functions to conduct a differential topology analysis. It focuses on analyzing an 'omic dataset with multiple conditions. While the package is mostly geared toward scRNASeq, it does not place any restriction on the actual input format.

Author: Hector Roux de Bezieux [aut, cre] , Koen Van den Berge [aut, ctb], Kelly Street [aut, ctb]

Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux at>

Citation (from within R, enter citation("condiments")):


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biocViews MultipleComparison, RNASeq, Sequencing, SingleCell, Software, Transcriptomics, Visualization
Version 1.6.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports slingshot(>= 1.9), mgcv, RANN, stats, SingleCellExperiment, SummarizedExperiment, utils, magrittr, dplyr (>= 1.0), Ecume (>= 0.9.1), methods, pbapply, matrixStats, BiocParallel, TrajectoryUtils, igraph, distinct
Suggests knitr, testthat, rmarkdown, covr, viridis, ggplot2, RColorBrewer, randomForest, tidyr, TSCAN
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