blacksheepr

DOI: 10.18129/B9.bioc.blacksheepr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see blacksheepr.

Outlier Analysis for pairwise differential comparison

Bioconductor version: 3.16

Blacksheep is a tool designed for outlier analysis in the context of pairwise comparisons in an effort to find distinguishing characteristics from two groups. This tool was designed to be applied for biological applications such as phosphoproteomics or transcriptomics, but it can be used for any data that can be represented by a 2D table, and has two sub populations within the table to compare.

Author: MacIntosh Cornwell [aut], RugglesLab [cre]

Maintainer: RugglesLab <ruggleslab at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("blacksheepr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("blacksheepr")

 

HTML	R Script	Outlier Analysis using blacksheepr - Phosphoprotein
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version	1.12.0
In Bioconductor since	BioC 3.10 (R-3.6) (3.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.6)
Imports	grid, stats, grDevices, utils, circlize, viridis, RColorBrewer, ComplexHeatmap, SummarizedExperiment, pasilla
LinkingTo
Suggests	testthat (>= 2.1.0), knitr, BiocStyle, rmarkdown, curl
SystemRequirements
Enhances
URL
BugReports	https://github.com/ruggleslab/blacksheepr/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	blacksheepr_1.12.0.tar.gz
Windows Binary	blacksheepr_1.12.0.zip
macOS Binary (x86_64)	blacksheepr_1.12.0.tgz
macOS Binary (arm64)	blacksheepr_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/blacksheepr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/blacksheepr
Bioc Package Browser	https://code.bioconductor.org/browse/blacksheepr/
Package Short Url	https://bioconductor.org/packages/blacksheepr/
Package Downloads Report	Download Stats