biodbMirbase

DOI: 10.18129/B9.bioc.biodbMirbase  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see biodbMirbase.

biodbMirbase, a library for connecting to miRBase mature database

Bioconductor version: 3.16

The biodbMirbase library is an extension of the biodb framework package, that provides access to miRBase mature database. It allows to retrieve entries by their accession number, and run specific web services. Description: The biodbMirbase library provides access to the miRBase Database, using biodb package framework.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbMirbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbMirbase")

 

HTML	R Script	Introduction to the biodbMirbase package.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	1.2.2
In Bioconductor since	BioC 3.15 (R-4.2) (1 year)
License	AGPL-3
Depends	R (>= 4.1)
Imports	biodb(>= 1.3.1), R6, stringr, chk
LinkingTo
Suggests	roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biodbMirbase_1.2.2.tar.gz
Windows Binary	biodbMirbase_1.2.2.zip
macOS Binary (x86_64)	biodbMirbase_1.2.2.tgz
macOS Binary (arm64)	biodbMirbase_1.2.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biodbMirbase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biodbMirbase
Bioc Package Browser	https://code.bioconductor.org/browse/biodbMirbase/
Package Short Url	https://bioconductor.org/packages/biodbMirbase/
Package Downloads Report	Download Stats