UniProt.ws

DOI: 10.18129/B9.bioc.UniProt.ws  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see UniProt.ws.

R Interface to UniProt Web Services

Bioconductor version: 3.16

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("UniProt.ws")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")

 

PDF R Script UniProt.ws: A package for retrieving data from the UniProt web service
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, BioCarta, GO, Infrastructure, KEGG, Software
Version 2.38.1
In Bioconductor since BioC 2.12 (R-3.0) (10 years)
License Artistic-2.0
Depends methods, utils, RSQLite, BiocGenerics(>= 0.13.8)
Imports AnnotationDbi, BiocFileCache, BiocBaseUtils, rjsoncons, jsonlite, httr, httpcache, progress
LinkingTo
Suggests RUnit, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me dagLogo, drugTargetInteractions
Suggests Me cleaver, qPLEXanalyzer
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package UniProt.ws_2.38.1.tar.gz
Windows Binary UniProt.ws_2.38.1.zip
macOS Binary (x86_64) UniProt.ws_2.38.1.tgz
macOS Binary (arm64) UniProt.ws_2.38.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/UniProt.ws
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/UniProt.ws
Bioc Package Browser https://code.bioconductor.org/browse/UniProt.ws/
Package Short Url https://bioconductor.org/packages/UniProt.ws/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: