SMAP

DOI: 10.18129/B9.bioc.SMAP  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see SMAP.

A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling

Bioconductor version: 3.16

Functions and classes for DNA copy number profiling of array-CGH data

Author: Robin Andersson <robin.andersson at lcb.uu.se>

Maintainer: Robin Andersson <robin.andersson at lcb.uu.se>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SMAP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SMAP")

 

PDF	R Script	SMAP
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software, TwoChannel
Version	1.62.0
In Bioconductor since	BioC 2.1 (R-2.6) (15.5 years)
License	GPL-2
Depends	R (>= 2.10), methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SMAP_1.62.0.tar.gz
Windows Binary	SMAP_1.62.0.zip (64-bit only)
macOS Binary (x86_64)	SMAP_1.62.0.tgz
macOS Binary (arm64)	SMAP_1.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SMAP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SMAP
Bioc Package Browser	https://code.bioconductor.org/browse/SMAP/
Package Short Url	https://bioconductor.org/packages/SMAP/
Package Downloads Report	Download Stats